向 /etc/apt/sources.list 中加入:
deb http://ftp.ctex.org/mirrors/CRAN/bin/linux/Ubuntu maverick/
Secure apt
The Ubuntu archives on CRAN are signed with the key of "Michael Rutter <[email protected]>" with key ID E084DAB9. You can fetch this key with
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
and then feed it to apt-key with
gpg -a --export E084DAB9 | sudo apt-key add -
安裝完整的R system, 使用
sudo apt-get update
sudo apt-get install r-base
管理和維護R包
The R packages part of the Ubuntu r-base and r-recommended packages are installed into the directory /usr/lib/R/library.
The other r-cran-* packages shipped with Ubuntu are installed into the directory /usr/lib/R/site-library.
These can be updated using apt-get with
sudo apt-get update
sudo apt-get upgrade
整體分為三部分進行管理:
1. R本身 和一些庫 用 apt-get 進行更新
2. 官方推薦包 默認存在於 /usr/lib/R/library 可用管理員權限下的 update.packages() 更新
3. 用戶安裝包 默認存在於 /usr/lib/R/site-library 可用管理員權限下的 update.packages() 更新
如果用非管理員的用戶去裝包, 會裝到另外一個新文件夾中. 因為對以上目錄沒有寫權限.
如果用非管理員權限裝包, 會裝到另外一個新文件夾中. 因為對以上目錄沒有寫權限. 用管理員權限會默認裝到 /usr/local/lib/R/site-library 裡. 更新的時候亦然.
sudo gedit /etc/R/Rprofile.site # 修改默認CRAN鏡像
手工安裝依賴了特別庫的包
安裝程序包'Cairo'時退出狀態的值不為0
安裝程序包'rgl'時退出狀態的值不為0
安裝程序包'XML'時退出狀態的值不為0:
安裝程序包'RCurl'時退出狀態的值不為0
安裝程序包'cairoDevice'時退出狀態的值不為0
安裝程序包'fftw'時退出狀態的值不為0
安裝程序包'rcdd'時退出狀態的值不為0
安裝程序包'rgdal'時退出狀態的值不為0
依賴rgl引起的:
installation of package 'ks' had non-zero exit status
installation of package 'feature' had non-zero exit status
installation of package 'flowCore' had non-zero exit status
installation of package 'flowViz' had non-zero exit status
安裝Cairo:
sudo apt-get install libcairo2-dev libxt-dev
然後install.packages("Cairo")即可
安裝cairoDevice:
sudo apt-get install r-cran-cairoDevice
安裝rgl包:
sudo apt-get install r-cran-rgl
安裝fftw包:
sudo apt-get install libfftw3-dev
然後install.packages("fftw")即可
安裝rcdd包:
sudo apt-get install libgmp3-dev
然後install.packages("rcdd")即可
安裝rgdal包:
sudo apt-get install libgdal-dev libproj-dev
然後install.packages("rgdal")即可
安裝XML包:
sudo apt-get install libxml++2.6-dev
然後install.packages("XML")即可
裝好以上就能裝RCurl了, 初步猜測可能是依賴libxml導致的.
安裝rimages包:
sudo apt-get install fftw-dev fftw2
然後install.packages("rimage")即可
安裝RKWard daily版
sudo add-apt-repository ppa:rkward-devel/rkward-dailys
然後
sudo apt-get update
sudo apt-get install rkward
sudo apt-get dist-upgrade
即可安裝RKWard daily版.
